PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G007100.1
Common NamePHAVU_002G007100g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 255aa    MW: 27853.7 Da    PI: 6.8714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G007100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-0582104123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++C + F++   L  H+++H
  Phvul.002G007100.1  82 YTCTYCRREFRSAQALGGHMNVH 104
                         9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.28E-679109No hitNo description
PfamPF139127.7E-782105IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.34482109IPR007087Zinc finger, C2H2
SMARTSM003550.005782104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAAEIGLVSM TQIQKLSQSQ HLKNQQTQPN PNTTTTTTPS SWMWNPREQL QQQEDDDDSW  60
EVRAFAEDTR NIMGTTWPPR SYTCTYCRRE FRSAQALGGH MNVHRRDRAR LHQPPPSSSS  120
TTTTSSLPTS SPYINIPPQD LVANAGLCLL YHLPSSPSAP PFPNSPTSNG PSSSPSPSTF  180
LSISSYPSNN FLMQTSFNFP SAPSAGINPA TVSSFCYNNS SKVEQSATSS SFATGHLEEL  240
DLELRLGHKP TQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2l1o_A4e-1377104229Transcriptional regulator SUPERMAN
1njq_A4e-1377104229superman protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156668.10.0hypothetical protein PHAVU_002G007100g
TrEMBLV7CES50.0V7CES5_PHAVU; Uncharacterized protein
STRINGGLYMA01G40671.13e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-30C2H2 family protein